EXPRESSION PATTERNS OF THE HUMAN RIBOSOMAL PROTEIN GENES eL14 AND uS19 IN COLON CANCER IS DEPENDENT ON THE TYPE AND STAGE OF THE CANCER CELL
Keywords:
Ribosomal protein genes, colon cancer, transcript level, eL14, uS19Abstract
Although the association of some ribosomal protein genes with colorectal cancer is widely known, the detailed mechanisms and complete list of associated genes is lacking. More importantly, the behaviours of these genes in different types and stages of the cancer are poorly understood. Herein we report the study of two ribosomal protein genes in cell lines derived from different sites and stages of colon cancer. Specifically, we analysed the expression pattern of eL14 and uS19 in HCT116 and SW480 cell lines. These two genes, although associated with a wide variety of cancer types, are poorly or have not been studied in colorectal cancer. Semi-quantitative reverse transcription – polymerase chain reaction (RT-PCR) approach was used, together with Students’ t-test validation. We found a significantly (p < 0.05) differential eL14 and uS19 expression patterns between HCT116 and SW480 cell lines. Our findings suggest that eL14 and uS19 have higher activity in a poorly differentiated cell line derived from advanced (metastatic) stage (Duke’s Stage D) colorectal carcinoma tissues compared to the moderately differentiated cell line derived from a mid-stage (Duke’s Stage B) colorectal adenocarcinoma tumour. This will have important implications for both ribosomal protein genes as type and stage specific biomarkers for colon cancer
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Ban, N., Beckmann, R., Cate, J.H., Dinman, J.D., Dragon, F., Ellis, S.R., Lafontaine, D.L., Lindahl, L., Liljas, A., Lipton, J.M. & McAlear, M.A. 2014. A new system for naming ribosomal proteins. Current Opinions in Structural Biology, 24: 165-169. https://doi.org/10.1016/j.sbi.2014.01.002 DOI: https://doi.org/10.1016/j.sbi.2014.01.002
Bretones, G., Álvarez, M.G., Arango, J.R., Rodríguez, D., Nadeu, F., Prado, M.A., ValdesMas, R., Puente, D.A., Paulo, J.A., Delgado, J., Villamor, N., Lopez-Guillermo, A., Finley, D.J., Gygi, S.P., Campo, E., Quesada, V. & LopezOtin, C. 2018. Altered patterns of global protein synthesis and translational fidelity in RPS15- mutated chronic lymphocytic leukemia. Blood, The Journal of the American Society of Hematology, 132(22): 2375-2388. https://doi.org/10.1182/blood-2017-09-804401 DOI: https://doi.org/10.1182/blood-2017-09-804401
Chomczynski, P. & Sacchi, N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochemistry, 162(1): 156-159. https://doi.org/10.1016/0003-2697(87)90021-2 DOI: https://doi.org/10.1016/0003-2697(87)90021-2
Daftuar, L., Zhu, Y., Jacq, X. & Prives, C. 2013. Ribosomal proteins RPL37, RPS15 and RPS20 regulate the Mdm2-p53-MdmX network. PLoS One, 8(7): e68667. https://doi.org/10.1371/journal.pone.0068667 DOI: https://doi.org/10.1371/journal.pone.0068667
Fang, W., Li, X., Jiang, Q., Liu, Z., Yang, H., Wang, S., Xie, S., Liu, Q., Liu, T., Huang, J. & Xie, W. 2008. Transcriptional patterns, biomarkers and pathways characterizing nasopharyngeal carcinoma of Southern China. Journal of Translational Medicine, 6(32): 1-13. https://doi.org/10.1186/1479-5876-6-32 DOI: https://doi.org/10.1186/1479-5876-6-32
Flatmark, K., Maelandsmo, G.M., Martinsen, M., Rasmussen, H. & Fodstad, Ø. 2004. Twelve colorectal cancer cell lines exhibit highly variable growth and metastatic capacities in an orthotopic model in nude mice. European Journal of Cancer, 40(10): 1593-1598. https://doi.org/10.1016/j.ejca.2004.02.023 DOI: https://doi.org/10.1016/j.ejca.2004.02.023
Gou, Y., Shi, Y., Zhang, Y., Nie, Y., Wang, J., Song, J., Jin, H., He, L., Gao, L., Qiao, L. & Wu, K. 2010. Ribosomal protein L6 promotes growth and cell cycle progression through upregulating cyclin E in gastric cancer cells. Biochemical and Biophysical Research Communications, 393: 788-793. https://doi.org/10.1016/j.bbrc.2010.02.083 DOI: https://doi.org/10.1016/j.bbrc.2010.02.083
Huang, X.P., Zhao, C.X., Li, Q.J., Cai, Y., Liu, F.X., Hu, H., Xu, X., Han, Y.L., Wu, M., Zhan, Q.M. & Wang, M.R. 2006. Alteration of RPL14 in squamous cell carcinomas and preneoplastic lesions of the esophagus. Gene, 366(1): 161-168. https://doi.org/10.1016/j.gene.2005.09.025 DOI: https://doi.org/10.1016/j.gene.2005.09.025
Kawada, M., Mizuno, M., Nasu, J., Uesu, T., Okazaki, H., Okada, H., Shimomura, H., Yamamoto, K., Tsuji, T., Fujita, T. & Shiratori, Y. 2003. Release of decay-accelerating factor into stools of patients with colorectal cancer by means of cleavage at the site of glycosylphosphatidylinositol anchor. Journal of Laboratory and Clinical Medicine, 142(5): 306-312. https://doi.org/10.1016/S0022-2143(03)00137-9 DOI: https://doi.org/10.1016/S0022-2143(03)00137-9
Kondoh, N., Schweinfest, C.W., Henderson, K.W. & Papas, T.S. 1992. Differential expression of S19 ribosomal protein, laminutesin-binding protein, and human lymphocyte antigen class I messenger RNAs associated with colon carcinoma progression and differentiation. Cancer Research, 52(4): 791-796.
Kreunin, P., Yoo, C., Urquidi, V., Lubman, D.M. & Goodison, S. 2007. Differential expression of ribosomal proteins in a human model identified by coupling 2-D liquid chromatography and mass spectrometry. Cancer Genomics Proteomics, 4(5): 329-339.
Lai, M. & Xu, J. 2007. Ribosomal proteins and colorectal cancer. Genomics, 8: 43-49. https://doi.org/10.2174/138920207780076938 DOI: https://doi.org/10.2174/138920207780076938
Liu, X.Q., Chen, H.K., Zhang, X.S., Pan, Z.G., Li, A., Feng, Q.S., Long, Q.X., Wang, X.Z. & Zeng, Y.X. 2003. Alterations of BLU, a candidate tumour suppressor gene on chromosome 3p21.3, in human nasopharyngeal carcinoma. International Journal of Cancer, 106(1): 60-65. https://doi.org/10.1002/ijc.11166 DOI: https://doi.org/10.1002/ijc.11166
Ljungström, V. & Rosenquist, R. 2018. Not so lost in translation: RPS15 mutations in CLL. Blood, The Journal of the American Society of Hematology, 132(22): 2317-2319. https://doi.org/10.1182/blood-2018-09-875179 DOI: https://doi.org/10.1182/blood-2018-09-875179
Ljungström, V., Cortese, D., Young, E., Pandzic, T., Mansouri, L., Plevova, K., Ntoufa, S., Baliakas, P., Clifford, R., Sutton, L.A. Blakemore, S.J., Stavroyianni, N., Agathangelidis, A., Rossi, D., Höglund, M., Kotaskova, J. Juliusson, G., Belessi, C., Chiorazzi, N., Panagiotidis, P., Langerak, A.W., Smedby, K.E., Oscier, D., Gaidano, G., Schuh, A., Davi, F., Pott, C., Strefford, J.C., Trentin, L., Pospisilova, S., Ghia, P., Stamatopoulos, K., Sjöblom, T. & Rosenquist, R. 2016. Whole-exome sequencing in relapsing chronic lymphocytic leukemia: clinical impact of recurrent RPS15 mutations. Blood, The Journal of the American Society of Hematology, 127(8): 1007-1016. https://doi.org/10.1182/blood-2015-10-674572 DOI: https://doi.org/10.1182/blood-2015-10-674572
Mao, Q., Zhang, P.H., Yang, J., Xu, J.D., Kong, M., Shen, H., Zhu, H., Bai, M., Zhou, L., Li, G., Wang, Q. & Li, S. 2016. iTRAQ-based proteomic analysis of Ginsenoside F2 on human gastric carcinoma cells SGC7901. Evidence-Based Complementary and Alternative Medicine, 2016: Article ID 2635483. https://doi.org/10.1155/2016/2635483 DOI: https://doi.org/10.1155/2016/2635483
Niu, N., Zhang, J., Huang, T., Sun, Y., Chen, Z., Yi, W., Korteweg, C., Wang, J. & Gu, J. 2012. IgG expression in human colorectal cancer and its relationship to cancer behaviors. PLoS One, 7(11): 247362. https://doi.org/10.1371/journal.pone.0047362 DOI: https://doi.org/10.1371/journal.pone.0047362
Pogue-Geile, K., Geiser, J.R., Shu, M., Miller, C., Wool, I.G., Meisler, A.I. & Pipas, J.M. 1991. Ribosomal protein genes are overexpressed in colorectal cancer: isolation of a cDNA clone encoding the human S3 ribosomal protein. Molecular and Cellular Biology, 11(8): 3842- 3849. https://doi.org/10.1128/mcb.11.8.3842-3849.1991 DOI: https://doi.org/10.1128/mcb.11.8.3842-3849.1991
Rajput, A., San Martin, I.D., Rose, R., Beko, A., LeVea, C., Sharratt, E., Mazurchuk, R., Hoffman, R.M., Brattain, M.G. & Wang, J. 2008. Characterization of HCT116 human colon cancer cells in an orthotopic model. Journal of Surgical Research, 147: 276-281. https://doi.org/10.1016/j.jss.2007.04.021 DOI: https://doi.org/10.1016/j.jss.2007.04.021
Romano, P., Manniello, A., Aresu, O., Armento, M., Cesaro, B. & Parodi, B. 2009. Cell lines database: Structure and recent improvements towards molecular authentication of human cell lines. Nucleic Acid Research, 37: D925-D932. https://doi.org/10.1093/nar/gkn730 DOI: https://doi.org/10.1093/nar/gkn730
Shenoy, N., Kessel, R., Bhagat, T.D., Bhattacharyya, S., Yu, Y., Mcmahon, C. & Verma, A. 2012. Alterations in the ribosomal machinery in cancer and hematologic disorders. Journal of Hematological Oncology, 5(1): 32. https://doi.org/10.1186/1756-8722-5-32 DOI: https://doi.org/10.1186/1756-8722-5-32
Shriver, S.P., Shriver, M.D., Tirpak, D.L., Bloch, L.M., Hunt, J.D., Ferrell, R.E. & Siegfried, J.M. 1998. Trinucleotide repeat length variation in the human ribosomal protein L14 gene (RPL14): localization to 3p21. 3 and loss of heterozygosity in lung and oral cancers. Mutation Research/Mutation Research Genomics, 406(1): 9-23. https://doi.org/10.1016/S1383-5726(98)00006-5 DOI: https://doi.org/10.1016/S1383-5726(98)00006-5
Sim, E.U.H., Chee, C.S.M., Vasudevan, L., Ng, K.L. & Chan, S.L.L. 2018. Selective differential expression of the ribosomal protein genes eL14 and uS19 in a well-differentiated epithelial cell line of nasopharyngeal carcinoma. Malaysian Applied Biology, 47(1): 247-253.
Sulima, S.O., Hofman, I.J., De Keersmaecker, K. & Dinman, J.D. 2017. How ribosomes translate cancer. Cancer Discovery, 7(10): 1069-1087. https://doi.org/10.1158/2159-8290.CD-17-0550 DOI: https://doi.org/10.1158/2159-8290.CD-17-0550
Walter, R.B., Obermoeller, R.D., Moore, D.D., Lacson, J.M., Della Coletta, L., McEntire, B.B., Morizot, D.C. & Nairn, R.S. 1996. Characteristics and mapping of the Xiphophorus maculatus (Teleostei: Poeciliidae) RPS15 gene. Cytogenetics and Cell Genetics, 75: 140-144. https://doi.org/10.1159/000134465 DOI: https://doi.org/10.1159/000134465
Wang, Y., Cheong, D., Chan, S. & Hooi, S.C. 2000. Ribosomal protein L7a gene is up-regulated but not fused to the tyrosine kinase receptor as chimeric trk oncogene in human colorectal carcinoma. International Journal of Oncology, 16(4): 757-819. https://doi.org/10.3892/ijo.16.4.757 DOI: https://doi.org/10.3892/ijo.16.4.757
Yeung, T.M., Gandhi, S.C., Wilding, J.L., Muschel, R. & Bodmer, W.F. 2010. Cancer stem cells from colorectal cancer-derived cell lines. Proceedings of the National Academy of Sciences, 107(8): 3722-3727. https://doi.org/10.1073/pnas.0915135107 DOI: https://doi.org/10.1073/pnas.0915135107
Yoon, S.Y., Kim, J.M., Oh, J.H., Jeon, Y.J., Lee, D.S., Kim, J.H., Choi, J.Y., Ahn, B.M., Kim, S., Yoo, H.S. & Kim, Y.S. 2006. Gene expression profiling of human HBV- and/or HCV associated hepatocellular carcinoma cells using sequence tags. International Journal of Oncology, 29: 315-327. https://doi.org/10.3892/ijo.29.2.315 DOI: https://doi.org/10.3892/ijo.29.2.315
Yu, C., Hong, H., Zhang, S., Zong, Y., Ma, J., Lu, A., Sun, J. & Zheng, M. 2019. Identification of key genes and pathways involved in microsatellite instability in colorectal cancer. Molecular Medicine Reports, 19(3): 2065-2076. https://doi.org/10.3892/mmr.2019.9849 DOI: https://doi.org/10.3892/mmr.2019.9849
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