The Effects of Submergence on Selected Malaysian Rice Varieties

https://doi.org/10.55230/mabjournal.v51i5.2365

Authors

  • Noor Liyana Sukiran Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, Bangi, Selangor, Malaysia
  • Muhammad Aiman Hafiz Jaya Karso Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia
  • Qatrunnada Qurratu'aini Mohd Razemin Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia
  • Noraziyah Abd Aziz Shamsudin Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia

Keywords:

Modern rice varieties, quiescence strategy, submergence, UKMRC2, underwater germination

Abstract

Various varieties have been developed in Malaysia, mainly to improve rice response to environmental changes, pests, and diseases, as well as to increase rice productivity under stressful conditions. Despite being semi-aquatic plants, rice is intolerant to complete submergence for a long period. This study was conducted to evaluate the response of seven Malaysian rice varieties at the vegetative stage under submergence stress. Two-week-old rice seedlings were submerged for 14 days, and the changes in plant height, chlorophyll content, and soluble sugar content were determined. The survival percentage of these varieties was observed after 14 days of de-submergence, where UKMRC2 and MR220CL possessed high survivability (90% & 60%, respectively). After submergence, all varieties showed height increment and reduced chlorophyll and soluble sugar contents. Based on our analyses, UKMRC2 performed better than other varieties, although slightly less than IR64-Sub1. It was confirmed that UKMRC2 is the submergence-tolerant variety, and its response to underwater germination was also determined. Our result showed that UKMRC2 might possess tolerance to anaerobic germination conditions, and more studies are needed to understand its molecular mechanism for submergence. In conclusion, many varieties used were susceptible to submergence, and the development of more submergence-tolerant varieties is crucial for Malaysia’s food security sustainability.

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References

Afrin, W., Nafis, M.H., Hossain, M.A., Islam, M.M. & Hossain, M.A. 2018. Responses of rice (Oryza sativa L.) genotypes to different levels of submergence. Comptes Rendus Biologies, 341(2): 85–96. DOI: https://doi.org/10.1016/j.crvi.2018.01.001

Ahmad, F., Hisham, S.N., Yusof, S.N., Hassan, N., Shamsuddin, N.A.A., Sukiran, N.L., Simoli, J.M. & Harun, A.R. 2020. Evaluation of selected rice mutant genotypes tolerant to submergence at germination and seedling stage. International Journal of Agriculture, Forestry and Plantation, 10: 108–112.

Ahmed, F., Rafii, M.Y., Ismail, M.R., Abdul Shukor, J., Harun, A.R., Latif, M.A, Hasan, M.M. & Tanweer, F.A. 2016. The addition of submergence-tolerant Sub1 gene into high yielding MR219 rice variety and analysis of its BC2F3 population in terms of yield and yield contributing characters to select advance lines as a variety. Biotechnology and Biotechnological Equipment, 30(5): 853–863. DOI: https://doi.org/10.1080/13102818.2016.1192959

Ajeng, A.A., Abdullah, R., Malek, M.A., Chew, K.W., Ho, Y.-C., Ling, T.C., Lau, B.F. & Show, P.L. 2020. The effects of biofertilizers on growth, soil fertility, and nutrients uptake of oil palm (Elaeis guineensis) under greenhouse conditions. Processes, 8(12): 1681. DOI: https://doi.org/10.3390/pr8121681

Arnon, D.I. 1949. copper enzymes in isolated chloroplasts. polyphenoloxidase in Beta vulgaris. Plant Physiology, 24(1): 1–15. DOI: https://doi.org/10.1104/pp.24.1.1

Bailey-Serres, J., Lee, S., & Brinton, E. 2012. Waterproofing crops: Effective flooding survival strategies. Plant Physiology, 160(4): 1698–1709. DOI: https://doi.org/10.1104/pp.112.208173

Bailey-Serres, J., Fukao, T., Ronald, P., Ismail, A., Heuer, S. & Mackill, D. 2010. Submergence tolerant rice: SUB1’s journey from landrace to modern cultivar. Rice, 3(2–3): 138–147. DOI: https://doi.org/10.1007/s12284-010-9048-5

Bui, L.T., Ella, E.S., Dionisio-Sese, M.L. & Ismail, A.M. 2019. Morpho-physiological changes in roots of rice seedling upon submergence. Rice Science, 26(3): 167–177. DOI: https://doi.org/10.1016/j.rsci.2019.04.003

Damm, A., Cogliati, S., Colombo, R., Fritsche, L., Genangeli, A., Genesio, L., Hanus, J., Peressotti, A., Rademske, P., Rascher, U., Schuettemeyer, D., Siegmann, B., Sturm, J. & Miglietta, F. 2022. Response times of remote sensing measured sun-induced chlorophyll fluorescence, surface temperature and vegetation indices to evolving soil water limitation in a crop canopy. Remote Sensing of Environment, 273: 112957. DOI: https://doi.org/10.1016/j.rse.2022.112957

Das, K.K., Sarkar, R.K. & Ismail, A.M. 2005. Elongation ability and non-structural carbohydrate levels in relation to submergence tolerance in rice. Plant Science, 168(1): 131–136. DOI: https://doi.org/10.1016/j.plantsci.2004.07.023

DOA. 2015. Paddy Statistics of Malaysia [WWW Document]. Department of Agriculture Peninsular Malaysia. URL http://www.doa.gov.my/index.php/pages/view/622?mid=239 (accessed 08.29.22)

Du, E., Dong, D., Zeng, X., Sun, Z., Jiang, X. & de Vries, W. 2017. Direct effect of acid rain on leaf chlorophyll content of terrestrial plants in China. Science of The Total Environment, 606: 764–769. DOI: https://doi.org/10.1016/j.scitotenv.2017.06.044

Fukao, T., Xu, K., Ronald, P. & Bailey-Serres, J. 2006. A variable cluster of Ethylene Response Factor-Like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell, 18(8): 2021–2034. DOI: https://doi.org/10.1105/tpc.106.043000

Gibbs, J., Morrell, S., Valdez, A., Setter, T.L. & Greenway, H. 2000. Regulation of alcoholic fermentation in coleoptiles of two rice cultivars differing in tolerance to anoxia. Journal of Experimental Botany, 51(345): 785–796. DOI: https://doi.org/10.1093/jexbot/51.345.785

Hattori, Y., Nagai, K. & Ashikari, M. 2011. Rice growth adapting to deepwater. Current Opinion in Plant Biology, 14(1): 100–105. DOI: https://doi.org/10.1016/j.pbi.2010.09.008

Hattori, Y., Nagai, K., Furukawa, S., Song, X.-J., Kawano, R., Sakakibara, H., Wu, J., Matsumoto, T., Yoshimura, A., Kitano, H., Matsuoka, M., Mori, H. & Ashikari, M. 2009. The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature, 460(7258): 1026–1030. DOI: https://doi.org/10.1038/nature08258

Ikmal, A.M., Amira, I. & Noraziyah A.A.S. 2019. Morpho-physiological responses of rice towards submergence tolerance. International Journal of Agriculture and Biology, 22(1): 35–42.

Ismail, A.M., Ella, E.S., Vergara, G.V. & Mackill, D.J. 2009. Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa). Annals of Botany, 103: 197–209. DOI: https://doi.org/10.1093/aob/mcn211

Ito, O., Ella, E. & Kawano, N. 1999. Physiological basis of submergence tolerance in rainfed lowland rice ecosystem. Field Crops Research, 64(1–2): 75–90. DOI: https://doi.org/10.1016/S0378-4290(99)00052-0

Jackson, M.B. & Ismail, A.M. 2015. Introduction to the Special Issue: Electrons, water and rice fields: plant response and adaptation to flooding and submergence stress. AoB Plants, 7. DOI: https://doi.org/10.1093/aobpla/plv078

Jackson, M. B., Waters, I., Setter, T. & Greenway, H. 1987. Injury to rice plants caused by complete submergence; a contribution by ethylerie (ethene). Journal of Experimental Botany, 38(11): 1826–1838. DOI: https://doi.org/10.1093/jxb/38.11.1826

Jiang, Z., Zhu, L., Wang, Q. & Hou, X. 2020. Autophagy-Related 2 regulates chlorophyll degradation under abiotic stress conditions in Arabidopsis. International Journal of Molecular Sciences, 21(12): 4515. DOI: https://doi.org/10.3390/ijms21124515

KADA. 2021. Laporan Kemajuan Tanaman Padi [WWW Document]. Kemubu Agricultural Development Authority. URL http://www.kada.gov.my/laporan-kemajuan-tanaman-padi/ (accessed 08.29.22)

Kende, H., van der Knaap, E. & Cho, H.-T. 1998. Deepwater rice: A model plant to study stem elongation. Plant Physiology, 118(4): 1105–1110. DOI: https://doi.org/10.1104/pp.118.4.1105

Kuroha, T. & Ashikari, M. 2020. Molecular mechanisms and future improvement of submergence tolerance in rice. Molecular Breeding, 40(4): 41. DOI: https://doi.org/10.1007/s11032-020-01122-y

Lee, K.-W., Chen, W. & Yu, S.-M. 2014. Metabolic adaptation to sugar/O2 deficiency for anaerobic germination and seedling growth in rice. Plant, Cell and Environment, 37(10): 2234–2244. DOI: https://doi.org/10.1111/pce.12311

Lee, K.-W., Chen, P.-W., Lu, C.-A., Chen, S., David Ho, T.-H. & Yu, S.-M. 2009. Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding. Science Signaling, 2(91). DOI: https://doi.org/10.1126/scisignal.2000333

Locke, A.M., Barding, G.A., Sathnur, S., Larive, C.K. & Bailey-Serres, J. 2018. Rice SUB1A constrains remodelling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery. Plant, Cell and Environment, 41(4): 721-736. DOI: https://doi.org/10.1111/pce.13094

Lv, Y., Fu, S., Chen, S., Zhang, W. & Qi, C. 2016. Ethylene response factor BnERF2-like (ERF2.4) from Brassica napus L. enhances submergence tolerance and alleviates oxidative damage caused by submergence in Arabidopsis thaliana. The Crop Journal, 4(3): 199–211. DOI: https://doi.org/10.1016/j.cj.2016.01.004

MADA. 2017. New rice varieties [WWW Document]. Muda Agricultural Development Authority. URL https://www.mada.gov.my/?page_id=13023&lang=en (accessed 08.29.22)

Meng, Y., Yu, S., Yu, Y. & Jiang, L. 2022. Flooding depth and duration concomitantly influence the growth traits and yield of rice. Irrigation and Drainage, 71(1): 94–107. DOI: https://doi.org/10.1002/ird.2632

Naznin, M.T., Lefsrud, M., Gravel, V., Obyedul, M. & Azad, K. 2019. Blue light added with red LEDs enhance growth characteristics, pigments content, and antioxidant capacity in lettuce, spinach, kale, basil, and sweet pepper in a controlled environment. Plants, 8(93). DOI: https://doi.org/10.3390/plants8040093

Nishiuchi, S., Yamauchi, T., Takahashi, H., Kotula, L. & Nakazono, M. 2012. Mechanisms for coping with submergence and waterlogging in rice. Rice, 5(2). DOI: https://doi.org/10.1186/1939-8433-5-2

Panda, D. & Barik, J. 2021. Flooding tolerance in rice: Focus on mechanisms and approaches. Rice Science, 28(1): 43–57. DOI: https://doi.org/10.1016/j.rsci.2020.11.006

Panda, D. & Sarkar, R. 2014. Mechanism associated with nonstructural carbohydrate accumulation in submergence tolerant rice (Oryza sativa L.) cultivars. Journal of Plant Interactions, 9(1): 62–68. DOI: https://doi.org/10.1080/17429145.2012.763000

Perata, P. 2018. The rice SUB1A gene: Making adaptation to submergence and post-submergence possible. Plant, Cell and Environment, 41(4): 717–720. DOI: https://doi.org/10.1111/pce.13122

Razali, S.N.H. 2019. Bachok pula dilanda banjir [WWW Document]. Harian Metro. https://www.hmetro.com.my/mutakhir/2019/12/522416/bachok-pula-dilanda-banjir (accessed 29.08.22)

Rosa, M., Prado, C., Podazza, G., Interdonato, R., González, J.A., Hilal, M. & Prado, F.E. 2009. Soluble sugars. Plant Signaling and Behavior, 4(5): 388–393. DOI: https://doi.org/10.4161/psb.4.5.8294

Samanta, P., Ganie, S.A., Chakraborty, A. & Dey, N. 2021. Study on regulation of carbohydrate usage in a heterogeneous rice population under submergence. Journal of Plant Biochemistry and Biotechnology, 30(1): 138–146. DOI: https://doi.org/10.1007/s13562-020-00577-6

Sakuraba, Y., Lee, S.H., Kim, Y.S., Park, O.K., Hörtensteiner, S. & Paek, N.C. 2014. Delayed degradation of chlorophylls and photosynthetic proteins in Arabidopsis autophagy mutants during stress-induced leaf yellowing. Journal of Experimental Botany, 65(14): 3915–3925. DOI: https://doi.org/10.1093/jxb/eru008

Sarkar, R.K. & Bhattacharjee, B. 2011. Rice genotypes with SUB1 QTL differ in submergence tolerance, elongation ability during submergence and re-generation growth at re-emergence. Rice, 5(7). DOI: https://doi.org/10.1007/s12284-011-9065-z

Sarkar, R. 1997. Saccharide content and growth parameters in relation with flooding tolerance in rice. Biologia Plantarum, 39(4): 597–603. DOI: https://doi.org/10.1023/A:1001713505921

Sarkar, R., De, R., Reddy, J. & Ramakrishnayya, G. 1996. Studies on the submergence tolerance mechanism in relation to carbohydrate, chlorophyll and specific leaf weight in rice (Oryza sativa L.). Journal of Plant Physiology, 149(5): 623–625. DOI: https://doi.org/10.1016/S0176-1617(96)80344-0

Sayani, G., Rup Kumar, K., Anupam, P. & Narottam, D. 2017. Study of selected biochemical parameters related to submergence tolerance in rice (Oryza sativa L.) with special reference to land races and wild species. Research Journal of Chemistry and Environment, 21(11): 29–38.

Sazali, S.A., Nordin, M.S., Shamsudin, N.A.A., Shahari, R., Yusop, M.R., Ab Razak, M.S.F., Kamaruzaman, R. & Salleh, M.S. 2021. Susceptibility of Malaysian rice (Oryza sativa L.) cultivar to saline water submergence based on the morphological traits. Journal of Agrobiotechnology, 12(2): 47–55. DOI: https://doi.org/10.37231/jab.2021.12.2.257

Septiningsih, E.M., Pamplona. A.M., Sanchez, D.L., Neeraja, C.N., Vergara, G.V., Heuer, S., Ismail, A.M. & Mackill, D.J. 2009. Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. Annals of Botany, 103: 151–160. DOI: https://doi.org/10.1093/aob/mcn206

Shamsuddin, N.A.A., Swamy, B.P.M., Ratnam, W., Teressa, M., Cruz, S., Raman, A. & Kumar, A. 2016. Marker assisted pyramiding of drought yield QTLs into a popular Malaysian rice cultivar, MR219. BMC Genetics, 17(30). DOI: https://doi.org/10.1186/s12863-016-0334-0

Sharma, A., Kumar, V., Shahzad, B., Ramakrishnan, M., Singh Sidhu, G.P., Bali, A.S., Handa, N., Kapoor, D., Yadav, P., Khanna, K., Bakshi, P., Rehman, A., Kohli, S.K., Khan, E. A., Parihar, R.D., Yuan, H., Thukral, A.K., Bhardwaj, R. & Zheng, B. 2020. Photosynthetic response of plants under different abiotic stresses: A review. Journal of Plant Growth Regulation, 39(2): 509–531. DOI: https://doi.org/10.1007/s00344-019-10018-x

Singh, S., Mackill, D.J. & Ismail, A.M. 2014. Physiological basis of tolerance to complete submergence in rice involves genetic factors in addition to the SUB1 gene. AoB Plants, 6. DOI: https://doi.org/10.1093/aobpla/plu060

Sone, C., Ito, O. & Sakagami, J.I. 2012. Characterizing submergence survival strategy in rice via chlorophyll fluorescence. Journal of Agronomy and Crop Science, 198: 152–160. DOI: https://doi.org/10.1111/j.1439-037X.2011.00494.x

Sone, C. & Sakagami, J.I. 2017. Physiological mechanism of chlorophyll breakdown for leaves under complete submergence in rice. Crop Science, 57(5): 2729–2738. DOI: https://doi.org/10.2135/cropsci2016.10.0884

Sunian, E., Jamal, M.S., Saidon, S.A., Abdul Ghaffar, M.B., Mokhtar, A., Kamaruzzaman, R., Ramli, A., Ramachandran K., Masilamany, D., Misman, S.N., Masarudin, M.F., Mohd Saad, M., Abd Rani, M.N.F., Mohd Yusob, S., Shaari, E.S., Mohd Khari, N.A. & Said, W. 2019. MARDI Sempadan 303 – Varieti padi baharu MARDI. Buletin Teknologi MARDI, 17: 155-166.

Tamang, B. & Fukao, T. 2015. Plant adaptation to multiple stresses during submergence and following desubmergence. International Journal of Molecular Sciences, 16(12): 30164–30180. DOI: https://doi.org/10.3390/ijms161226226

Wickneswari, R. & Bhuiyan, M.A.R. 2014. Exploiting wild accessions for development of high yielding new rice genotypes. Malaysian Applied Biology, 43(2): 89–95.

Xu, K., Xu, X., Fukao, T., Canlas, P., Maghirang-Rodriguez, R., Heuer, S., Ismail, A.M., Bailey-Serres, J., Ronald, P.C. & Mackill, D.J. 2006. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature, 442(7103): 705–708. DOI: https://doi.org/10.1038/nature04920

Yoshida, S., Forno, D.A., Cock, J.H., & Gomez, K.A. 1976. Laboratory Manual for Physiological Studies of Rice. 3rd Ed. International Rice Research Institute, Philippines. 61 pp.

Published

26-12-2022

How to Cite

Sukiran, N. L. ., Karso, M. A. H. J., Razemin, Q. Q. M. ., & Shamsudin, N. A. A. (2022). The Effects of Submergence on Selected Malaysian Rice Varieties. Malaysian Applied Biology, 51(5), 97–106. https://doi.org/10.55230/mabjournal.v51i5.2365

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